Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   8.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 195 FDSTYIPR*PNR 160
           +DSTYIP+  N+
Sbjct: 321 YDSTYIPKVKNK 332


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 74  FWVTPF 91
           FWVTPF
Sbjct: 180 FWVTPF 185


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 54 NNNESGFSFL 25
          N+NE GFS+L
Sbjct: 23 NDNEFGFSYL 32


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 74  FWVTPF 91
           FWVTPF
Sbjct: 180 FWVTPF 185


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -3

Query: 156 EKHDETSVCMLLIFKSIIDNSKNGVTQNRIIS 61
           ++HD+  + ++  F  +   +KNG + N +I+
Sbjct: 473 DEHDDAFIGIVNQFHILQFITKNGTSNNYLIN 504


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 238 KHKKMPNLVTAIHNF 194
           +H K PNLV  +  F
Sbjct: 863 RHWKFPNLVEVLDEF 877


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,602
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)