Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61650.1 68418.m07735 cyclin family protein similar to cyclin...    26   5.2  
At5g46060.1 68418.m05664 expressed protein contains Pfam profile...    26   6.8  
At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    26   6.8  
At1g54070.1 68414.m06161 dormancy/auxin associated protein-related     26   6.8  
At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC...    25   9.0  
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC...    25   9.0  
At3g13222.1 68416.m01655 expressed protein                             25   9.0  

>At5g61650.1 68418.m07735 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 219

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 278 FTYNAKSSVATLNKAQKDAKFSN-SYSQFLIALIYLD 171
           FT   K S++  +  ++  +++N SYS +++A IYLD
Sbjct: 52  FTGVTKPSISIRSYLERIFEYANCSYSCYIVAYIYLD 88


>At5g46060.1 68418.m05664 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599; expression
           supported by MPSS
          Length = 248

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 46  IIVTLGDNAILGYAILRVVNYTFKYQ*HTNTSFIMLLKSVWLSRYISAIKN 198
           ++V  G   +L Y +  +    + +  HT   F+ + KS+W+ R + A K+
Sbjct: 13  VLVPFGLIIVLSYHLFLLYRILY-FPYHTIIGFMNIDKSIWVDRIMQARKD 62


>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   MFVNEQIIKMKNRFHYCYPWR*CDFG 80
           MFV+  ++K+K R  +C  W   D G
Sbjct: 138 MFVSRTLVKLKLRSEHCVNWWHWDIG 163


>At1g54070.1 68414.m06161 dormancy/auxin associated protein-related
          Length = 123

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 162 RLEKHDETSVCMLLIFKSIIDNSKNGVTQNRIISKGNNNESG 37
           +L KHD  S     +  S    S + VT++ +++KGNNN  G
Sbjct: 23  KLRKHDSLST----VRSSPPSLSSDQVTRSIMVTKGNNNVRG 60


>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 288

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 46  IIVTLGDNAILGYAILR---VVNYTFKYQ*HTNTSFIMLLKSVWLSRYISAIKNCE 204
           ++V +  +A+L  A  R   +V YT ++   TNT  ++ L   W+S +  A K+ E
Sbjct: 13  LLVAISASALLCCAFARDFSIVGYTPEHL--TNTDKLLELFESWMSEHSKAYKSVE 66


>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 355

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 46  IIVTLGDNAILGYAILR---VVNYTFKYQ*HTNTSFIMLLKSVWLSRYISAIKNCE 204
           ++V +  +A+L  A  R   +V YT ++   TNT  ++ L   W+S +  A K+ E
Sbjct: 13  LLVAISASALLCCAFARDFSIVGYTPEHL--TNTDKLLELFESWMSEHSKAYKSVE 66


>At3g13222.1 68416.m01655 expressed protein
          Length = 567

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 287 YKMFTYNAKSSVATLNKAQKDAKFSNSYSQFLIALIYL 174
           Y  + +N   S AT+N   K+ K  N Y+   ++L  L
Sbjct: 462 YTSYAFNHIPSAATINATHKEEKKENMYTTGPLSLANL 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,269,415
Number of Sequences: 28952
Number of extensions: 104661
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)