Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   0.45 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   4.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   7.3  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 35 NPLCTSLSISLLYW 76
          N +CTSL++S L+W
Sbjct: 26 NNMCTSLNLSNLFW 39


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 104 PLQIINDRATSTTMKYLRKYIMD 36
           PL  +ND  + TT    R ++MD
Sbjct: 100 PLTFVNDTVSFTTTVSARFWLMD 122


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 52  LKYFIVVLVALSLMICS 102
           ++YFI++L  ++L +C+
Sbjct: 1   MRYFIILLALVALGVCA 17


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 16  LHLFKIKSIMYFLKYFIVVLVALSLMI 96
           L L+K K+I+Y +K  + +  A++ +I
Sbjct: 143 LWLYKDKTILYMVKLTLKLSCAMNFLI 169


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 198 GCSRCGENFKAFGNNFPTLLQT 133
           GC++C E  K   N     L+T
Sbjct: 71  GCNKCNEKQKHTANKVVNYLKT 92


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 198 GCSRCGENFKAFGNNFPTLLQT 133
           GC++C E  K   N     L+T
Sbjct: 71  GCNKCNEKQKHTANKVVNYLKT 92


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 241  NLDSHGYARGYRLH 200
            N  S+G  +GY+LH
Sbjct: 1137 NTHSNGIIQGYKLH 1150


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 241  NLDSHGYARGYRLH 200
            N  S+G  +GY+LH
Sbjct: 1133 NTHSNGIIQGYKLH 1146


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 125 GIFGSACPLQI 93
           GIFGS C + I
Sbjct: 105 GIFGSTCKIDI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,594
Number of Sequences: 438
Number of extensions: 1414
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)