Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.94 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   3.8  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 236 MNWCVQNPCQ-ECNCCSRCNSIQAV 307
           ++WC  NPC+ +  C    N  Q +
Sbjct: 100 VDWCSTNPCENQATCVQNKNQYQCL 124



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 236 MNWCVQNPCQECNCCS 283
           +N+C  +PCQ    C+
Sbjct: 339 VNFCATSPCQNGGVCT 354


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 31  PIRKKRKYELGRPAANTRLGPQRIH 105
           P+R   ++    PA N   GP   H
Sbjct: 36  PLRTSYQHHFNSPAGNAHTGPTGTH 60


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 32  PYARRGSMS*GVPLQTPG 85
           PY   G    G+PLQ PG
Sbjct: 178 PYPNFGVPPAGIPLQNPG 195


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 281 YNNCILDKG 255
           Y NC+LDKG
Sbjct: 41  YVNCLLDKG 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,391
Number of Sequences: 336
Number of extensions: 2902
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)