Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   134   1e-32
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   134   1e-32
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    31   0.14 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.3  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.3  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   9.4  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  134 bits (323), Expect = 1e-32
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGS 180
           KR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGS
Sbjct: 10  KRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGS 69

Query: 181 ECSTRKTRIIDVVYNASNNELVRTKPLSR 267
           E  ++KTRII V Y+ SNNELVRT  L++
Sbjct: 70  EGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 41/85 (48%), Positives = 52/85 (61%)
 Frame = +3

Query: 255 TLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQR 434
           TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR  
Sbjct: 95  TLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLG 148

Query: 435 LAKVEGALEEQFHTGRLLACVASRP 509
            +KV+ ALE QF  GRL A V+SRP
Sbjct: 149 DSKVDSALETQFAAGRLYAVVSSRP 173



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKR 589
           PGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 173 PGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  134 bits (323), Expect = 1e-32
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGS 180
           KR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGS
Sbjct: 10  KRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGS 69

Query: 181 ECSTRKTRIIDVVYNASNNELVRTKPLSR 267
           E  ++KTRII V Y+ SNNELVRT  L++
Sbjct: 70  EGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 41/85 (48%), Positives = 52/85 (61%)
 Frame = +3

Query: 255 TLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQR 434
           TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR  
Sbjct: 95  TLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLG 148

Query: 435 LAKVEGALEEQFHTGRLLACVASRP 509
            +KV+ ALE QF  GRL A V+SRP
Sbjct: 149 DSKVDSALETQFAAGRLYAVVSSRP 173



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKR 589
           PGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 173 PGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 194 AKPVSLMLCIMHLTMNWCVQNPCQECNCCSRCNS 295
           +KPVSL +    +T NW  +     CN C   N+
Sbjct: 295 SKPVSLCVYPEKITFNWLTEGTVDSCNLCKLSNT 328


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 288 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 467
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 468 FHTGRLLACVASR 506
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 55   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 207
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 22  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 150
           K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 42  KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 233 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 147
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 80  PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 175
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 249 YKTLVKNAIVVVDATPFRQWY-ESHYTLPLGRK---KGAKLTEAEEAIINKKRSQKTARK 416
           Y T+++  +  VD +P   +  E+      GRK    G K   A E I+N   S   +R+
Sbjct: 427 YATVIRYRMDSVDRSPIYDFLIEAEKAAQEGRKGMWSGKK--PAYENIVNASESSLRSRQ 484

Query: 417 YLAR-QRLAKVEGALE 461
           YL+  QR  K+   +E
Sbjct: 485 YLSSLQRTRKLSVIIE 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,729
Number of Sequences: 5004
Number of extensions: 44963
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)