Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30028
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 132 3e-31
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 131 4e-31
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.26
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.4
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.2
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.4
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 28 7.4
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 7.4
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 9.7
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 132 bits (318), Expect = 3e-31
Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
KRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWG
Sbjct: 10 KRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWG 69
Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
SE TRKTRI+DVVYNASNNELVRT+ L
Sbjct: 70 SEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 68.1 bits (159), Expect = 6e-12
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 25/111 (22%)
Frame = +3
Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA-------------------------K 356
+TLVK+AIV VDA PF+QWY +HY + +GRKK A K
Sbjct: 95 QTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLK 154
Query: 357 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 509
+AE K+S RK RQ+ ++ +EEQF +GRLLAC++SRP
Sbjct: 155 GQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRP 205
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = +2
Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 205 PGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 131 bits (317), Expect = 4e-31
Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
KRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWG
Sbjct: 10 KRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWG 69
Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
SE TRKTRI+DVVYNASNNELVRT+ L
Sbjct: 70 SEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKT 407
+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+S
Sbjct: 95 QTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHV 154
Query: 408 ARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 509
RK RQ+ ++ +EEQF +GRLLAC++SRP
Sbjct: 155 VRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRP 188
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = +2
Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 188 PGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 46 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 180
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 1 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 150
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 1 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 135
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 1 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 135
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 83 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 241
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 345 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 476
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
C Y L GV S IA L+ + P+ H+ YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 100 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKPLSR 267
+H + + GG T R +R + C +++ ++V++ + NELV T S+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQ 431
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
C Y L GV S IA L+ + P+ H+ YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,169
Number of Sequences: 37544
Number of extensions: 324294
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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