Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...   120   3e-29

>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score =  120 bits (290), Expect = 3e-29
 Identities = 54/89 (60%), Positives = 73/89 (82%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 431
           KTLVKNAI+V+DA+PFRQWYESHY LPLG+K+  +L   EE +++KKR++   RKY+ RQ
Sbjct: 23  KTLVKNAIIVIDASPFRQWYESHYLLPLGKKR--ELKAGEEDVLSKKRTKSNLRKYVKRQ 80

Query: 432 RLAKVEGALEEQFHTGRLLACVASRPVSV 518
           + AK++ A+EEQF+ GRLLAC++SRP  V
Sbjct: 81  KNAKIDPAVEEQFNAGRLLACISSRPGQV 109



 Score = 58.8 bits (136), Expect = 1e-10
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQ GRADGYILEGKELEFYL+KIK+K++K
Sbjct: 106 PGQVGRADGYILEGKELEFYLKKIKNKKSK 135



 Score = 44.4 bits (100), Expect = 3e-06
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = +1

Query: 193 RKTRIIDVVYNASNNELVRTKPL 261
           RK RIIDVVYNASNNEL+RTK L
Sbjct: 3   RKARIIDVVYNASNNELIRTKTL 25


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,367
Number of Sequences: 2352
Number of extensions: 11948
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)