Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   128   3e-30
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.53 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.53 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.53 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.53 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.53 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.53 
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   6.6  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.6  
Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  128 bits (309), Expect = 3e-30
 Identities = 59/87 (67%), Positives = 70/87 (80%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGS 180
           KR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRLD+GNFSW S
Sbjct: 10  KRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWAS 69

Query: 181 ECSTRKTRIIDVVYNASNNELVRTKPL 261
           E +TRKTRI+D +YNA+NNELVRTK L
Sbjct: 70  EQTTRKTRIVDTMYNATNNELVRTKTL 96



 Score =  118 bits (285), Expect = 3e-27
 Identities = 56/89 (62%), Positives = 67/89 (75%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 431
           KTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ
Sbjct: 94  KTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQ 153

Query: 432 RLAKVEGALEEQFHTGRLLACVASRPVSV 518
           + A V+  L EQF+TGRLLA ++S P  V
Sbjct: 154 KTAAVDALLIEQFNTGRLLARISSSPGQV 182



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/31 (77%), Positives = 30/31 (96%)
 Frame = +2

Query: 503 SPGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           SPGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 178 SPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 142 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 246
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 339 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 464
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 245 TNSLLDALYTTSMIRVLRV 189
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical
           protein T26G10.4 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 342 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPVSV 518
           KK A L +A E   N+K   +   K + R    +V  AL+ +FHT +L+    SR V +
Sbjct: 257 KKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEISRVVQM 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,178
Number of Sequences: 27780
Number of extensions: 267725
Number of successful extensions: 844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)