Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30027
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   2.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.3  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   3.0  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   3.0  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.3  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   7.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.0  

>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 526 SSEDGGEHPVGKDIQSYQSRDNDTVNVAGSESLTA 422
           +SE   EHP+GK I    S   D V+  G ES  A
Sbjct: 567 ASESSSEHPIGKAITEKASEFTD-VSEIGIESFNA 600


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 401 NNIYFTLGGANVTLYST*NCTFFTSPGLITKSVLLIINSNMFSCVTLP 258
           N++YF   G +V LY+  N     SP L+ K + L+  S +   + +P
Sbjct: 27  NHLYFGTEGGDVFLYNFSNFQLNESPELV-KKISLVSKSRVNRILAMP 73


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 274 PASRFLRVLKRLRIVVQMYVQP 209
           PAS + R ++R R V+  YVQP
Sbjct: 521 PASAYSRTVERERFVLMAYVQP 542


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 475 DMTGCPYRPGARHHPRRRKLLETQQIIYKALPRPA 579
           D    PYR   R   RRR+ LE ++   K L RPA
Sbjct: 479 DYATIPYRDQVREQARRRR-LEVEKTEPKKLARPA 512


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 120 VSSNTTQAYSIRVDGTALSSYQA 188
           V+ N  Q+YS  +DGTAL S  A
Sbjct: 156 VNGNVNQSYSKGIDGTALPSTHA 178


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 492 LPTGCSPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIENTDV 620
           +P G SPP+S    SRNS+    S  + G  S  +   EN+D+
Sbjct: 5   MPEG-SPPTSRSIQSRNSSYSTSSNERIGTPSTISLS-ENSDL 45


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 480 DWMSLP-TGCSPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIEN 611
           +W S P  G    S +EE   N+ +    T+   + SNS K  EN
Sbjct: 76  EWSSSPIAGIIVESEDEEVVENNLHSQMGTSCNKINSNSNKGKEN 120


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 507 SPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIENTD 617
           +PP S  E++  ST++  STT A   S ++    ++D
Sbjct: 229 APPDSASESTPASTSYASSTTSATSTSTTSGSSGSSD 265


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 507 SPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIENTD 617
           S PS+   A R S+ H +  T + +  ++   +EN +
Sbjct: 112 SKPSANSSAERTSSQHQKPETSSQIGKDNAAPVENVN 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,917
Number of Sequences: 5004
Number of extensions: 57649
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)