Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30027
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0336 + 24500665-24502647                                         31   1.0  
05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308     29   4.1  
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025...    29   4.1  
08_02_1136 - 24614236-24615207                                         28   5.4  
06_01_0626 + 4549661-4550947                                           28   7.2  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   7.2  
05_01_0093 - 617515-619260                                             27   9.5  
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    27   9.5  

>04_04_0336 + 24500665-24502647
          Length = 660

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 152 DAVCLCRIRRHWGTETPARAA 90
           DA CL  IRRHW T  P+  A
Sbjct: 408 DASCLAGIRRHWDTPVPSEIA 428


>05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308
          Length = 359

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 32  FASCIPSLLLILLVSAQTKPQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTMHSL 208
           F S + SLLL+LL+SA  +P P        +++ D ++       GV  +  +  +H+L
Sbjct: 7   FFSSVFSLLLLLLLSAGVRPPPVAERQPGELYDADPAVLAAFAGTGVEFIVGNEDLHNL 65


>04_03_0810 -
           19902049-19902069,19902195-19902400,19902523-19902559,
           19902623-19902675,19903149-19903226,19903496-19903586,
           19903773-19903917,19903988-19904227,19904313-19904523,
           19904788-19905232
          Length = 508

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +3

Query: 444 ATFTVSLSRD*Y----DWMSLPTGCSPPSSEEEASRNST 548
           AT   S + D Y    DW SL    SPP S EE+ +N +
Sbjct: 37  ATAATSFADDFYRSGTDWSSLLAAPSPPPSSEESGKNKS 75


>08_02_1136 - 24614236-24615207
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 507 SPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIENTDVEDFLGG 638
           S  S+   ASR      QSTT A V +    KIE  +V + L G
Sbjct: 53  STSSASAAASRAKDAADQSTTAAAVAAEEFVKIETINVSELLAG 96


>06_01_0626 + 4549661-4550947
          Length = 428

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 222 CMFNHNECIV*SLDSLITPYHLPGCCMLVSYSKTLGHGDTSAGCGFV 82
           C+F+ + C V +L SL  P  LP    + S      H D S G G V
Sbjct: 120 CLFDADTCKVDTLPSLHKPKCLPYSIFIPSADDKDDHDDNSNGGGSV 166


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 389 FTLGGANVTLYST*NCTFFTSPGLITKSVLLIINSNMFSCVTLPKSS*T 243
           F  G A  +L+S  NC + +S GL+TK  + ++       + L K++ T
Sbjct: 177 FKKGDAGPSLFSPNNCRYDSSLGLLTKKFINLLEGAEDGTLDLNKAAET 225


>05_01_0093 - 617515-619260
          Length = 581

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 46  PFTAAHTAGVSSNEAAARAGVSVPQCLRIRHKHTASG*MVRRYQAIK 186
           P+TAA  A +S   +  R  V   +CL + H+  A G    R++ ++
Sbjct: 61  PYTAACAASLSRRLSRTRDYVVAAKCLALAHRLVADGDPHFRHELVR 107


>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 156 PGCCMLVSYSKTLGHGDTSAGCGFV*ADTSSMSSSEGIQLANDIMFKKV 10
           P  C LV  S    HG+  AG G   A  SS   S G+Q A   + ++V
Sbjct: 342 PKRCCLVPGSPLAEHGERPAGGGTEVAWASSQGRSGGMQRAGGRVLQQV 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,917
Number of Sequences: 37544
Number of extensions: 383176
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)