Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30024
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81541-6|CAB04413.2| 326|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical ... 29 2.3
Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 27 9.2
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 27 9.2
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 27 9.2
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 27 9.2
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 27 9.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 27 9.2
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 27 9.2
>Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical
protein T23H4.1 protein.
Length = 483
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -1
Query: 231 ENLLTLALARAMICSIYHWINFIIIRVTFENVTFIWRKPCVRFIFNVVFYLS-VYCKYVF 55
+NL + + S Y W+ F ++ V F + PC+ I+ + + S + K +
Sbjct: 110 DNLPEVVNREYTMVSYYQWVPFFLVYVAFS-----FYAPCL--IWRLFYDKSGIRLKDIM 162
Query: 54 ITANEKPNLLPTAKASN 4
AN+K N++PT + +N
Sbjct: 163 GFANDKANVVPTQRTAN 179
>Z81541-6|CAB04413.2| 326|Caenorhabditis elegans Hypothetical
protein F48F5.4 protein.
Length = 326
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 138 VTFIWRKPCVRFIFNVVFYLSVYCKYVFITANEKPNLLPTAKAS 7
VTF+ PCV F +++++ Y + V N KP ++ TA S
Sbjct: 274 VTFLGTIPCVLDPFVQIYFITPYREAVRKLFNRKPRVVDTANVS 317
>AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical
protein K10B4.4 protein.
Length = 403
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 195 ICSI-YHWINFIIIRVTFENVTFIWRKPCVRFIFNVVFYLSVYCKYVFITAN 43
IC + +H + + T+ T I P V+F+ +VFY+S +C Y AN
Sbjct: 282 ICWLPFHIQRLLSVYTTWSETTTI--SPPVQFLSMIVFYISGFCYYSNSAAN 331
>Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical
protein F45E6.3 protein.
Length = 459
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 189 SIYHWINFIIIRVTFENVTFIWRKPCVRFIFNVV--FYLSVYCKYVFITANEKPNL 28
S +HW F F + ++RK C + N++ F + + + +FI A P +
Sbjct: 194 SEFHWHQFFEYSYKFSQESLVFRKNCFNLMPNILNQFIIKIVERILFIYAKLNPGV 249
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 953 FHWGGCQSKSQNFFADMTVCQ 973
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1167 FHWGGCQSKSQNFFADMTVCQ 1187
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1303 FHWGGCQSKSQNFFADMTVCQ 1323
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1352 FHWGGCQSKSQNFFADMTVCQ 1372
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1344 FHWGGCQSKSQNFFADMTVCQ 1364
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1355 FHWGGCQSKSQNFFADMTVCQ 1375
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 169 FHYNPCNIRKCNFYMEKTVCQ 107
FH+ C + NF+ + TVCQ
Sbjct: 1356 FHWGGCQSKSQNFFADMTVCQ 1376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,915
Number of Sequences: 27780
Number of extensions: 260793
Number of successful extensions: 534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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