Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30019
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.8  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 158 LQRRDW-ENPGVTQLNRLAAHPPFASWRNSEEAPPIALPNSCA 283
           LQ   W +NP  T+LN L     +    + +  P  +LPNSCA
Sbjct: 450 LQVIQWMQNP--TELNGLRDFQEWKEKCDIKGQPYCSLPNSCA 490


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 158 LQRRDW-ENPGVTQLNRLAAHPPFASWRNSEEAPPIALPNSCA 283
           LQ   W +NP  T+LN L     +    + +  P  +LPNSCA
Sbjct: 457 LQVIQWMQNP--TELNGLRDFQEWKEKCDIKGQPYCSLPNSCA 497


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,856
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)