Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30019
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.1
05_03_0258 - 11153709-11156090 29 3.5
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 28 4.6
08_01_0038 - 282431-283954 28 4.6
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 28 4.6
11_05_0017 - 18416977-18417936 28 6.1
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 28 6.1
11_01_0529 - 4158926-4158993,4160010-4160076 28 6.1
11_01_0412 + 3131673-3131903,3133192-3133971 27 8.0
09_02_0442 - 9438617-9439381,9439463-9439693 27 8.0
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.0
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 27 8.0
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 135 ITIHWPSFYNVV-TGKTLALPNLIALQH 215
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>05_03_0258 - 11153709-11156090
Length = 793
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 321 NINAYNLPFAIQAAQLLGRAIGGASSLLRQLAKGGCAARRLSWVT 187
N+N YNL F + + A+ +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAM---LEMLEEMSRSGCTPNRVTWNT 431
>11_06_0227 +
21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 415 TEIGLSVVPVWNK-SPLLKNVDSNVKGRKTVYRAMAHYVNHHPN 543
T++GL +P+ N+ +L D+ + + A H VN HPN
Sbjct: 862 TDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPN 905
>08_01_0038 - 282431-283954
Length = 507
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 267 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 443
FP++A+ P R C + Y VK R LL+QLI + R + L + D ++ S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286
Query: 444 LEQE 455
++QE
Sbjct: 287 IQQE 290
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 282 AQLLGRAIGGASSLLRQLAKGGCAARRL 199
A L G A G L RQL++GGC +RL
Sbjct: 85 ASLPGDANGRGLLLARQLSRGGCGEQRL 112
>11_05_0017 - 18416977-18417936
Length = 319
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 538 GDGSRSGPSPDRRFFAL*RWSP 473
G R GP+ RRFF RW+P
Sbjct: 275 GVARRPGPTQGRRFFGCGRWTP 296
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = -2
Query: 320 ILTLTICHSPFRLRNCWEGRSVGPLRYYAS-------WRKGDVLQGD*VG 192
+L L+ H P L+ C+ S+ P YY W+ +LQGD +G
Sbjct: 386 VLELSYKHMPIDLKQCFVALSLYPKYYYLDENMVVWLWKLLGLLQGDEIG 435
>11_01_0529 - 4158926-4158993,4160010-4160076
Length = 44
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 146 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE--EAPP 259
+A++LQRR + G + + LAA P +W N + E PP
Sbjct: 1 MALLLQRRHGADAGGDRHHHLAAEWPKVTWHNLDFLEIPP 40
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 490 GRKTVYRAMAHYVNHHPNSSFLGSRCRK 573
G++T+ A NH P ++F GS CR+
Sbjct: 198 GQETLATTAASNRNHRPGATFSGSGCRE 225
>09_02_0442 - 9438617-9439381,9439463-9439693
Length = 331
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 291 IQAAQLLGRAIGGASSLLRQLAKGGCAARRLSWVTPGFSQSR 166
+ AA LLG A G + L KG C A + V G +SR
Sbjct: 14 VAAAVLLGLAGAGHAQLQNGFYKGKCGANDVEAVVQGIVRSR 55
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 147 WPSFYNVV-TGKTLALPNLIALQH 215
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 227 ASWRNSEEAPPIALPNSCAA*MANGKL 307
++W N+++APP+ LP AA +N L
Sbjct: 45 SAWSNADDAPPLPLPLQDAAVDSNDSL 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,091
Number of Sequences: 37544
Number of extensions: 319830
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -