Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30018
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    32   0.38 
Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum co...    29   2.7  
AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 LALPNLIALQHIPLSPAGVIAKRPHRSPFPT-VAQPEWRMANCKR*YFV 326
           LA  NL  LQ I ++ + ++ K P  + +    A+ EW  +NC+  +FV
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFV 60


>Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical
           protein F49E2.1b protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 417 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGDGPLREPS 536
           RDR+ C  S EQ S + ++ +  ++A++ +  +G   EP+
Sbjct: 343 RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 382


>AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum
           cofactor synthesis-step1 protein MOCS1A-B protein.
          Length = 91

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 417 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGDGPLREPS 536
           RDR+ C  S EQ S + ++ +  ++A++ +  +G   EP+
Sbjct: 21  RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 60


>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 186 ALPNLIALQHIPLSPAGVIAKRPHRSPFPTVAQPEWR 296
           + P+L  ++  P+SP   I+++ H  P P V QPE R
Sbjct: 209 SFPDLQIMKPPPVSPPSNISEQIHHQP-PLVPQPESR 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,172
Number of Sequences: 27780
Number of extensions: 293263
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)