Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30017
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.0
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 3.0
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 4.0
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 7.0
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 7.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 7.0
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.3
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 25 9.3
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 9.3
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 9.3
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 25 9.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 249 AALFISCSNMAPSYLTTKNANKSLFNFSLT-STSCIFLFSSSVTIGT*SI 103
++ F S S +PS +++ ++ S S T STS + + SSS+ G+ SI
Sbjct: 600 SSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSI 649
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 452 LHSFLNNSTCCSTYSSKLFNGQEERTLYFGFPLLLW*TDLKVKIGDF 312
L +F+NN+T Y S F G L+F +P W +K++ F
Sbjct: 26 LVAFVNNTTISKPYFSTFFEGGIHSLLFF-YPKRNWWFFIKMRYLSF 71
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 455 PLHSFL--NNSTCCSTYSSKLFNGQEERTLYFGFPLL 351
P+ SF+ N+S C ST KL RTL G P+L
Sbjct: 392 PIQSFVVRNDSPCGSTIGPKLAAMTGMRTLDLGNPML 428
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 39 HLFLIKPWGTFHYRKCIHLLFLWIMYLWLPNC 134
H+F G F H F+ I+YLW C
Sbjct: 5 HIFYFITGGIFILWILAHSFFVKIIYLWASGC 36
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 322 ILTLRSVYHSSKGKPKYKVLSSCPLNNFEEYVEQQVE 432
+LT+ +V S KGKP+ V+ + EE +E+ V+
Sbjct: 512 VLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVK 548
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 39 HLFLIKPWGTFHYRKCI 89
H F+IKP G +Y+ C+
Sbjct: 582 HSFMIKPGGIVNYQACV 598
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 2 RYPNSTNAELILSPLLNKALGNISLPQMHPSTVLMDYVPMV 124
R PNS++ E + SP++ + N L + ST+L P++
Sbjct: 111 RPPNSSSLEPVFSPIVTAKIENALL--KYKSTILRHQSPLL 149
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = +3
Query: 39 HLFLIKPWGTFHYRKCI 89
HL ++PW T + +C+
Sbjct: 470 HLVKVRPWRTLRFNECV 486
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 131 LLNRKIHDVLVNEKLKRDLLAFLVVKYEGAILEH 232
+LN+KI D N L + F+ V +G EH
Sbjct: 240 ILNKKIVDEKANSNLYFSAIKFINVMKKGPFYEH 273
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 198 KNANKSLFNFSLTSTSCIFLFS---SSVTIGT 112
KN + SL+N +L S FLF+ S T+GT
Sbjct: 107 KNLDPSLYNITLVSPRDHFLFTPMLPSCTVGT 138
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 178 FQFFIDKYIVYLSVQQFGNHRYIIHKNSRW 89
+Q FI I + G H+Y H ++W
Sbjct: 151 YQLFITLGIFIAACINMGTHKYTTHPEAQW 180
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 219 APSYLTTKNANKSLFNFSLTSTSCIFLFSSSVTIGT 112
AP+ + +NA + ++L + SCI F ++ +GT
Sbjct: 350 APTVIQARNAPSAQNAYALDTKSCIADFRTNSFVGT 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,881
Number of Sequences: 5004
Number of extensions: 47137
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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