Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30017
         (532 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rh...    29   7.7  

>AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rho
           GTPase, homolog 2 (C. elegans) protein.
          Length = 1116

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 424 VVPHILQSCLMDKKRELCILVFLY-CCGKLILRSKLEIFLEID 299
           +VP ++Q C+M+ ++  C +V LY  CG   ++ +L    E D
Sbjct: 752 MVPLLIQKCIMEIEKRGCQVVGLYRLCGSAAVKKELREAFERD 794


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,507,003
Number of Sequences: 237096
Number of extensions: 1548746
Number of successful extensions: 2422
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2422
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)