Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30014
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 70 1e-13
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 69 2e-13
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 46 2e-06
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.33
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 1.8
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 5.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 9.4
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 24 9.4
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 24 9.4
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 24 9.4
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 70.1 bits (164), Expect = 1e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +1
Query: 1 LKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 165
LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 556 LKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 69.3 bits (162), Expect = 2e-13
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 1 LKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 165
LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 556 LKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 46.4 bits (105), Expect = 2e-06
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 KISDSDKQTILDKCNDTIKWLDSN-QLADKEEYEHKQKELEGIYNPIITKMY 162
K+ DKQ +LD D +WL+ + + A KEE+E ++++L+ + +PI K+Y
Sbjct: 590 KVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.33
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 4 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 129
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 173 EESPEVCRASRAEHPEPE 226
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 52 NDTIKWLDSNQLADKEEYEHKQKELEGIYNP 144
N+ +K D + ++ ++E E + +GIY P
Sbjct: 141 NNVVKEDDKSSISSEDEEEELRSAKDGIYRP 171
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +1
Query: 7 EKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIY 138
E+ SDSD++ D +++ + + ++ + ++ E +G+Y
Sbjct: 1823 EESSDSDREEPPDLYRNSVLGIFQGDIVNENDENYEDSEDDGVY 1866
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 124 LEGIYNPIITKMY 162
L+G+Y+ IITK+Y
Sbjct: 282 LDGVYDTIITKLY 294
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 164 RVPEESPEVCRASRAEHPEPEVP 232
++ ++ P RASRA EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 23.8 bits (49), Expect = 9.4
Identities = 4/21 (19%), Positives = 14/21 (66%)
Frame = -1
Query: 344 FNQGEVTRWLLQVGLSVVWNV 282
++ G +W + +G++++W +
Sbjct: 140 YSHGTTAQWRISIGINLLWGI 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,077
Number of Sequences: 5004
Number of extensions: 21616
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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