Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30013
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.25 
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   1.8  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   2.3  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   4.1  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    24   7.1  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    24   7.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    23   9.4  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    23   9.4  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    23   9.4  

>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -3

Query: 300 RITWRRAESQQIAARPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*H 121
           RIT +  + + +   P+L S   ++   SS   S P  +T + P  R   A  KKK    
Sbjct: 256 RITRKGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAKKTRVSP--RRSTAASKKK---- 309

Query: 120 RSPRSKWASTSRL 82
            SP SK AS+  +
Sbjct: 310 -SPSSKRASSDEI 321


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -3

Query: 288 RRAESQQIAARPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 136
           R +  Q +A+RP+LP  T   + + S +      +  +    RS ++  +K
Sbjct: 202 RSSRQQTLASRPSLPDLTSADKSQPSDEAESITRKNSIGMSTRSDESTAEK 252


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 243 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR 127
           S    +E   ST+YS P    E  PD   + + V+ KN+
Sbjct: 243 SNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -3

Query: 300 RITWRRAESQQIAARPALPSTTP-RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR* 124
           R  +RR    +   RP      P R E + S D   P H  E   D  SR    ++    
Sbjct: 247 RSDYRRPHDDEYR-RPRGDEYRPGRDEYRRSRDDGRPSHDDEYRRDAYSRSPSPRRDREE 305

Query: 123 HRSP 112
           +RSP
Sbjct: 306 NRSP 309


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 288 RRAESQQIAARPALPSTTPRQERKSSTDYSE 196
           +R+  +     PA+  T P++E KS + Y E
Sbjct: 27  KRSVQRHARGFPAVSRTLPKRESKSMSAYKE 57


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 288 RRAESQQIAARPALPSTTPRQERKSS 211
           ++ E Q++   P  P  TP+QE KS+
Sbjct: 48  KQIEKQKLTGSPN-PQATPKQENKSN 72


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 209 QTIPSPDIELSYIRTFGAVMHVLRKKTDSIDLRD 108
           Q IP P I  S        + VL  + D IDL D
Sbjct: 113 QIIPEPTISNSIESHLRKCLMVLLSRVDEIDLAD 146


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 215 RLQTIPSPDIELSYIRTFGAVMHVLRKKTDSIDLR 111
           R + I +  +E S   T   + H+  + TDSIDLR
Sbjct: 212 RYKAIKNSTLEDSTNSTSDVLNHLESQPTDSIDLR 246


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 297 ITWRRAESQQIAARPALPSTTPRQERK 217
           I W R++  Q+    +LP++ P   +K
Sbjct: 547 IDWARSKGMQVTVASSLPNSQPLGTKK 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,782
Number of Sequences: 5004
Number of extensions: 22876
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)