Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30013
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 31 0.23
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 1.2
06_01_0957 - 7378608-7378662,7378828-7379012 27 2.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 2.9
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 3.8
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 27 3.8
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 27 3.8
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 27 5.0
01_06_0695 - 31292622-31293317 27 5.0
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204 26 6.6
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 26 6.6
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 26 6.6
10_06_0009 + 9564100-9564119,9564482-9564539,9564674-9564727,956... 26 8.7
01_06_1239 + 35652053-35654050 26 8.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 246 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKN 130
PS TP ER S+D PR Y R+RD K++
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQH 403
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 161 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 45
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 155 VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 30
++ LR T +I +R P L R S R+ SH + PP
Sbjct: 14 LLDALRTTTAAIRVRAPAALSRAASEKIAVPRIAPSHAVPPP 55
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 243 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRS 106
S +PR+ R YS R R+ RD+R ++++R R RS
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRS 188
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 28 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 126
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 243 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSR 85
S +PR+ R S YS R R+ Y RSR + R RS+ S SR
Sbjct: 155 SPSPRRGRGRSRSYSRSRSRSRSYSRSRSRSLSGSPRAR-RELERSRSLSYSR 206
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 288 RRAESQQIAARPALPSTTPRQERKSSTDYSEPRH-RTELYPDLRSRDARVKKKNR*HRSP 112
+RAE + A ST TD +H T+ D ++D + +++ HR P
Sbjct: 177 KRAELPASSTTAAASSTVVGDSGDKPTDDDTEKHMETDKDNDKDAKDKDKEGQSQPHRKP 236
Query: 111 RSKWA 97
R WA
Sbjct: 237 RRCWA 241
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 297 ITWRRAESQQIAARPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HR 118
++ + + Q++ R L +++ KS+++ R E D +SR AR KKK + ++
Sbjct: 250 VSVQEEQQQRLRLRLRLRQRREQEDNKSTSNGKRKREEAESSMD-KSRAAR-KKKAKTYK 307
Query: 117 SPR 109
SP+
Sbjct: 308 SPK 310
>01_06_0695 - 31292622-31293317
Length = 231
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 255 PALPSTTPRQERKSSTDYSEPRHRTELYPDLR 160
P PS++ SST S P HR L P R
Sbjct: 16 PNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
Length = 306
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASRLRRSGYNSVRCR 193
++ EA+ + A A R A C A RLR +GYNS CR
Sbjct: 87 DAEEAMRQMRAAAAGACSCASRGAAAAAAGSGGCRSCTLRFLAERLRDAGYNSAICR 143
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 288 RRAESQQIAARPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*H 121
R S+ ++R S+ R SS DY P H + D SRD ++R H
Sbjct: 251 RDRSSRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRSSRDRDH 306
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 255 PALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSR 85
P PS+TP+Q S SE +H ++L D + + + +S W T++
Sbjct: 1054 PLSPSSTPKQSWSFSGTPSELKHSSKLE---NGSDIEARPPSARNNHEKSSWLQTAK 1107
>10_06_0009 +
9564100-9564119,9564482-9564539,9564674-9564727,
9564816-9564917,9565322-9565357
Length = 89
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 255 PALPSTTPRQERKSSTDYSEPRHRTELYPDLR 160
PALP+TTP + +T +E + P LR
Sbjct: 55 PALPTTTPTRATAEATHRAEEASQDTKAPSLR 86
>01_06_1239 + 35652053-35654050
Length = 665
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 282 AESQQIAARPALPSTTPRQERKSSTDYSEPRH-RTELYPDL 163
A ++ + P+LPS+ P RK +EP+H R + PDL
Sbjct: 31 ATAKSVWVNPSLPSSQPFHRRKP----AEPQHQRQDHVPDL 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,053
Number of Sequences: 37544
Number of extensions: 170470
Number of successful extensions: 554
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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