Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30013
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amin...    28   1.4  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    27   4.4  
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    26   5.8  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        26   5.8  
U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astac...    26   7.7  

>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 279 ESQQIAARPALPSTTPRQERKSSTDYSEPRHR 184
           +S Q+AA+  LPS  P   R  ++D SE   R
Sbjct: 874 KSPQVAAKGELPSAAPPSSRTPNSDISEKSDR 905


>Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amino
           acid  decarboxylaseprotein.
          Length = 625

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 279 ESQQIAARPALPSTTPRQERKSSTDYSEPRHR 184
           +S Q+AA+  LPS  P   R  ++D SE   R
Sbjct: 594 KSPQVAAKGELPSAAPPSSRTPNSDISEKSDR 625


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-like
            cell adhesionmolecule family protein 1 protein.
          Length = 1073

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 255  PALPSTTPRQERKSSTDYSEPRHRT 181
            P + ++ P  E K   DY EP+H T
Sbjct: 977  PIILTSLPGDELKRPADYEEPKHAT 1001


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 242 AQHPARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKTDSIDLRDPN 102
           A H   N S++ +      +LS +   G   H    KTD+  L + N
Sbjct: 334 ASHAGSNSSKINSASGQSSDLSMVGPNGIKSHSTSNKTDNYALDEAN 380


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 231 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKW 100
           R  R+ +TD S  +HR  +Y D  S    + K +  H  P   W
Sbjct: 860 RPSRRMTTDNSRVKHRYIIYADFES---IIWKFSNAHYKPNESW 900


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 243 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPR 109
           S +PR ER++S  YS  R R+      RSR     +      SP+
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPSPQ 258


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 243 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPR 109
           S +PR ER++S  YS  R R+      RSR     +      SP+
Sbjct: 214 SRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPSPQ 258


>U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astacin
           protease protein28 protein.
          Length = 497

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 274 STDRSTTCSTEHNTPPGTEVVYRLFRAP 191
           STD ST C      P G ++ +++ + P
Sbjct: 391 STDNSTNCYWHIKAPEGQQIEFKMTKTP 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,582
Number of Sequences: 27780
Number of extensions: 138324
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)