Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30012
         (485 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LCM2 Cluster: Putative uncharacterized protein; n=1; ...    33   2.6  
UniRef50_A0D3T6 Cluster: Chromosome undetermined scaffold_37, wh...    33   2.6  
UniRef50_A3Y825 Cluster: Transcriptional regulator, AraC family ...    32   6.0  
UniRef50_A2DTE8 Cluster: Clan CA, family C2, calpain-like cystei...    32   6.0  
UniRef50_O51462 Cluster: Putative uncharacterized protein BB0509...    32   7.9  
UniRef50_A6L820 Cluster: Glycosyltransferase family 4; n=1; Para...    32   7.9  
UniRef50_A2X773 Cluster: Putative uncharacterized protein; n=4; ...    32   7.9  

>UniRef50_A6LCM2 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides distasonis ATCC 8503|Rep: Putative
           uncharacterized protein - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 607

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 220 IVLYKSIYFGFVNRFPIQKPLRYLYFNQMNV*WQPTPLRVHKRLKFYLTDFKTHI 384
           I LY  I +GF +R+  +    Y Y N     W P+     K    +LTDFK H+
Sbjct: 332 ITLYTPIPWGFRHRYKDEATGDYSYIN-----WAPSSEEFKKMWNIFLTDFKFHL 381


>UniRef50_A0D3T6 Cluster: Chromosome undetermined scaffold_37, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_37,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1021

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 21/71 (29%), Positives = 40/71 (56%)
 Frame = +2

Query: 59  LN*VCYLITSGF*IALIHIKRKSEFH*MCRYSIILQNDQTLYRIINVLNNGVNGLCYIKA 238
           LN    ++++ F I ++++K  S+FH   +YS+ L +DQ+  ++   L + +NG   I+ 
Sbjct: 637 LNSYIIIVSTAFLILMLYMK--SKFHQKMKYSLNL-DDQSRAQLNQSLRSSINGSILIRV 693

Query: 239 YISDL*IVFQF 271
           Y   L I  +F
Sbjct: 694 YNQQLRIQSEF 704


>UniRef50_A3Y825 Cluster: Transcriptional regulator, AraC family
           protein; n=1; Marinomonas sp. MED121|Rep:
           Transcriptional regulator, AraC family protein -
           Marinomonas sp. MED121
          Length = 289

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -3

Query: 396 NIHKYMCFEIGEIEFQTL--VYTQRRGLPSYIHLIKIKIPQWFLNWKTI-----HKSEIY 238
           N++   CF +  IEF TL   Y   +G P+ +H    +  Q F++W+       HKS  +
Sbjct: 124 NMNDNTCFNVELIEFHTLSIAYLTHKGHPNQLH----RSIQTFIDWRRARALPPHKSRTF 179

Query: 237 AFI*HNP 217
             + H+P
Sbjct: 180 NLLYHDP 186


>UniRef50_A2DTE8 Cluster: Clan CA, family C2, calpain-like cysteine
           peptidase; n=1; Trichomonas vaginalis G3|Rep: Clan CA,
           family C2, calpain-like cysteine peptidase - Trichomonas
           vaginalis G3
          Length = 1437

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 465 YLFTQILISIYFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY 337
           Y  T +L S+YFYV+L  Y   +   K     + EI F   +Y
Sbjct: 710 YSITFVLFSLYFYVLLHTYRAINTTKKGYSIAVSEIFFPVNIY 752


>UniRef50_O51462 Cluster: Putative uncharacterized protein BB0509;
           n=3; Borrelia burgdorferi group|Rep: Putative
           uncharacterized protein BB0509 - Borrelia burgdorferi
           (Lyme disease spirochete)
          Length = 419

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -3

Query: 447 LISIYFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVYTQRRGLP-SYIHLIKIKIPQ 280
           L S+  +  + L++ F + ++     + E+  +T + + ++  P SYIHL+++K+P+
Sbjct: 347 LSSMVLHKHVVLFLPFLDENRIFRVSVNEVNAETSIKSLQKRYPKSYIHLVRVKVPE 403


>UniRef50_A6L820 Cluster: Glycosyltransferase family 4; n=1;
           Parabacteroides distasonis ATCC 8503|Rep:
           Glycosyltransferase family 4 - Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 365

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 396 NIHKYMCFEIGEIEFQTLVYTQRRGLPSYIHLIKIKIPQWFLN 268
           N++K +C  +   EF+  +   RRG+ S IHL   K+P +F++
Sbjct: 128 NLNKALCIFVLSQEFKNELI--RRGVKSDIHLTSTKVPDYFIS 168


>UniRef50_A2X773 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 854

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 235 SIYFGFV--NRFPIQKPLRYLYFNQMNV*WQPTPLRVHKRLKFYLTDF 372
           S++FG +  N FP+ +PL++L+   + + W P   +VH   K  L D+
Sbjct: 198 SMWFGILIGNHFPLGEPLKHLHIMLVPLVWDPGDSKVHLH-KILLNDW 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,911,590
Number of Sequences: 1657284
Number of extensions: 8104014
Number of successful extensions: 16566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16427
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)