Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30012
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   4.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.0  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 191 LFDTMFGHFVILSSTYTF 138
           +FD +F  F ++++TYTF
Sbjct: 54  IFDNLFNLFKVINTTYTF 71


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 149 YSIILQNDQTLYRIINVLNNGVNGLCYI 232
           +  +L  D+T+++++N+ N   N  C I
Sbjct: 297 WEAVLHKDKTVFQVMNLFNYDQNHKCLI 324


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 281 SGF*IGKRFTNPKYMLLY 228
           SG+ I KRF NP Y+  Y
Sbjct: 185 SGYLILKRFANPSYISFY 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,447
Number of Sequences: 5004
Number of extensions: 38963
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)