Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30012
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    29   2.4  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    27   7.2  
AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear recep...    27   7.2  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    27   7.2  
AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormo...    27   7.2  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    27   7.2  
AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormo...    27   7.2  
AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormo...    27   7.2  
Z82286-1|CAB05305.1|  184|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
           protein F25E5.1 protein.
          Length = 1062

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 384 TYECYQTQRIILVPHRNISILKSV 455
           TY+C+ T R  L PHR   + K++
Sbjct: 92  TYQCFATTRSFLTPHRKRQLAKTM 115


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 416 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 459


>AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 420 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 463


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 415 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 458


>AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform b protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 322 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 365


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 373 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 416


>AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform d protein.
          Length = 659

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 455 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 498


>AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform c protein.
          Length = 733

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 YFYVVLELYVEFDNIHKYMCFEIGEIEFQTLVY--TQRRGLPSYIH 304
           +F +    Y++F+NI KY  FE G ++   L Y  T    LPS+ H
Sbjct: 529 WFVMPNNTYIDFNNIAKY--FENGALKDLKLDYETTTNLFLPSFTH 572


>Z82286-1|CAB05305.1|  184|Caenorhabditis elegans Hypothetical
           protein W02A2.2 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 QMNV*WQPTPLRVHKRLKFYLTDFKT 378
           Q +  +QPTP  V K  K Y+ ++KT
Sbjct: 124 QFHAGYQPTPEMVKKLFKGYIAEYKT 149


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -3

Query: 456 TQILISIYFYVVLELYVEFDNIHKYMCFE 370
           T+ + ++Y ++ L ++V  ++  +YMCF+
Sbjct: 133 TKTMENVYIFLGLGIFVSINDFCQYMCFQ 161


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 414 LYVEFDNIHKYMCFEIGEIEFQTLVYTQRRGLPSYIHLIK-IKIPQWFLNWKTIHK 250
           L VE+    KY+    G I+++ ++Y  R+ LP  I ++  I++P   L+W  I K
Sbjct: 137 LTVEWSPNGKYLAS--GSIDYRIIIYNARK-LPDRITVLNDIQLPVKGLSWDPIGK 189


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 414 LYVEFDNIHKYMCFEIGEIEFQTLVYTQRRGLPSYIHLIK-IKIPQWFLNWKTIHK 250
           L VE+    KY+    G I+++ ++Y  R+ LP  I ++  I++P   L+W  I K
Sbjct: 425 LTVEWSPNGKYLAS--GSIDYRIIIYNARK-LPDRITVLNDIQLPVKGLSWDPIGK 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,161,892
Number of Sequences: 27780
Number of extensions: 207785
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)