Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30012
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 357 EFQTLVYTQRRGLPSYIHLIKIKIPQWFLN 268
           E Q L   +R    S +HL + ++  WF N
Sbjct: 30  EKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 77  NNIPSSVTDVFNNYN 33
           NN+P  +   +NN+N
Sbjct: 521 NNVPKKLNMFYNNFN 535


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 220 IVLYKSIYFGF 252
           I++Y++ YFGF
Sbjct: 186 IIIYRAAYFGF 196


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 220 IVLYKSIYFGF 252
           I++Y++ YFGF
Sbjct: 186 IIIYRAAYFGF 196


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 77  NNIPSSVTDVFNNYN 33
           NN+P  +   +NN+N
Sbjct: 521 NNVPKKLNMFYNNFN 535


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 236 LLYNTIH*LHYSEHLLFDTMFGHFVILSSTYTFNEIQIFV*YELRQFRN 90
           L    I  L  +E   FD M  HFV     Y ++ +   +   +R F N
Sbjct: 50  LAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRVLSVLGRHVRDFLN 98


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 80  SNNIPSSVTDVFNNYN*N*Y 21
           SNN   S  + +NNYN N Y
Sbjct: 319 SNNYKYSNYNNYNNYNNNNY 338


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 CMMATHAAACTQAFEILSHRFQNTYTYECYQTQRIILV 422
           C+M   A++      IL++  +N  T+E  +  +++ +
Sbjct: 300 CIMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVFL 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,507
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)