Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30011
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   3.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   4.7  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   8.1  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 20  KDKKYPDRRAMGFPFDRPSXSATSLQDFILPNMGLQDITIQLQNVTEPN 166
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 71  PSXSATSLQDFILPNMGLQDITIQLQNVT-EPNPRNPPMSV*NVAKLK*NTRLKPQIRF 244
           PS   +S   F        D      ++T +P+PR+P      +  LK NTR  P+IR+
Sbjct: 79  PSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRSP------LTPLKGNTRASPEIRY 131


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 62   FDRPSXSATSLQDFILPNMGLQDITIQLQNVTEP 163
            FD P  S T+L     P  G+Q     + NVT P
Sbjct: 1170 FDLPFMSGTTLDGRCSPYHGMQVEVSMVLNVTNP 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,854
Number of Sequences: 5004
Number of extensions: 28875
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)