Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30010
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)               29   4.1  
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)                29   4.1  

>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
          Length = 890

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 607 PNWRLDTFVFLFIYQSCPHPGRNWLLSSQG*TILYFKKNILHTTN 741
           P + LD FV  F+   C   G  W+ ++   T+ +    ++H+TN
Sbjct: 715 PGYNLDLFVVGFLMGMCSVLGLPWMCATPVHTVSHLHALMVHSTN 759


>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
          Length = 271

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 535 IGICVPSKSYIPSWQPCHHNPWTP 464
           +GI V  +S+ PSW  C + P++P
Sbjct: 183 VGISVRCRSFAPSWAVCTNPPFSP 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,146,730
Number of Sequences: 59808
Number of extensions: 433377
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)