Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30006
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 42 3e-04
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 40 0.001
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 40 0.002
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 38 0.007
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.009
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.020
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 36 0.027
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 33 0.19
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.19
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.33
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.44
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 30 1.3
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 29 3.1
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 5.4
SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29) 28 7.1
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09) 27 9.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 78.2 bits (184), Expect = 5e-15
Identities = 40/79 (50%), Positives = 50/79 (63%)
Frame = +3
Query: 12 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSA 191
+VIS+ + VT AG+ SYP DT+RRRMMM SG A + YK +I C I K EG +
Sbjct: 211 VVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA---VKYKGSIDCTIQILKKEGAMS 267
Query: 192 FFKGAFSNVLRGTGGAFVL 248
KGA +N+LRG GA VL
Sbjct: 268 LMKGAGANILRGMAGAGVL 286
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 99 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 224
M+++GR D YK I C + ++EG +F++G +N +R
Sbjct: 43 MLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 51 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 224
V+ +YP D VRRRM M+ RA D YK+T+H +++I K EG +KG + N+L+
Sbjct: 174 VSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLEGFRGLYKGMWPNILK 229
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 9 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTS 188
P+V VA +YP D VRRRM M+ G Y +T + I ++EG
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737
Query: 189 AFFKGAFSNVLR 224
FKG + N+L+
Sbjct: 738 GLFKGMWPNLLK 749
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 69 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 221
YP D V+ RM Q +++ +YKN+I C+ + + EG ++G +L
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 24 WAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 200
W++ T +T+ +++ YP + ++ R+ +Q KS+ YK H TI + EG A +K
Sbjct: 424 WSLVGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYK 482
Query: 201 G---AFSNVLRGTGGAFVLVLMMRS 266
G +F L+ G + M RS
Sbjct: 483 GVTPSFLACLQAVLGVIIAENMFRS 507
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 24 WAIAQTVTTVAGIISYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSAF 194
+ + T + A + P + V+ RM +Q R + Y+N H TIAK EG A
Sbjct: 8 FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67
Query: 195 FKGAF 209
KG F
Sbjct: 68 QKGLF 72
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 45 TTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG---AFSN 215
T +A + YP + ++ R+ +Q KS+ YK H TI + EG A +KG +F
Sbjct: 163 TLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYKGVTPSFLG 221
Query: 216 VLRGTGGAFV 245
+ GG+F+
Sbjct: 222 LFPFAGGSFL 231
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 54 AGIISYPFDTVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGT 230
A ++ +P DT++ R+ M + +YKN+ C+ I + EG F+G +L
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSI 111
Query: 231 GGAFVL 248
VL
Sbjct: 112 PNTTVL 117
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 51 VAGIISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 224
V I P D + +M +Q RA+S I Y+N H TIA+T G ++G + ++R
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVR 273
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 54 AGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 221
A + P D ++ R+ + + R + + Y I C I EG +AF+KGA ++
Sbjct: 219 ASVAVNPLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMI 273
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 54 AGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 221
AG++S +PFD ++ R+ K YK + C K EG F +G + +L
Sbjct: 142 AGVVSWASTFPFDVIKSRIQADGNLGK--FRYKGMMDCALQSYKEEGMIVFTRGIWPTLL 199
Query: 222 RG 227
RG
Sbjct: 200 RG 201
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 32.3 bits (70), Expect = 0.33
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +3
Query: 48 TVAGIISYPFDTVRRRMMM--QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 221
T++ I++YP D V+ ++ K Y C I + G SAF +G + +L
Sbjct: 369 TLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATIL 428
Query: 222 RG--TGGA--FVLVLMMRSRRSCKS---NV-RIVTIIS 311
RG T A V+ L +R R+ +S NV R+V ++S
Sbjct: 429 RGFPTNAATLTVVTLTLRLARNPESHYENVNRVVELLS 466
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 51 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVLR 224
V+ I+YP D VRRRM + +G Y I+ + K +G ++G N LR
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLR 242
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 66 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 221
+YP D VR R+ Q + + TI C + K G A +KG +L
Sbjct: 82 TYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGFVPTLL 131
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = +3
Query: 51 VAGIISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSAF 194
V +I YPF+TV R+ +Q R D L Y + + C+ TI + EG F
Sbjct: 287 VPDLILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGF 346
Query: 195 FKG 203
++G
Sbjct: 347 YRG 349
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 63 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVLR 224
++YP D VRRRM + +G Y I+ + ++ +G ++G N LR
Sbjct: 123 LAYPLDVVRRRMQL-AGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLR 176
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 51 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 224
+ I+ P D V+ R Q+ + I YKN H + IAK EG + G V R
Sbjct: 127 IGSAIATPTDLVKIRF--QAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 30 IAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGA 206
IA +V V G+ + P DT++ R+ G D+L A KTEG +KG
Sbjct: 74 IAGSVGGVTGVTAGQPLDTIKVRLQASFGAGPLDML--------ARTVKTEGVRGLYKGM 125
Query: 207 FSNVL 221
+ VL
Sbjct: 126 LAPVL 130
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Frame = +3
Query: 12 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG-----------RAKSDILYKNTIHCW 158
I++ + A ++A + P DT + R+ +Q R D Y+ +
Sbjct: 14 ILVKFCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTM 73
Query: 159 ATIAKTEGTSAFFKGAFSNVLR 224
T+ KTEG +KG + R
Sbjct: 74 VTLFKTEGMKTMYKGLIPGIHR 95
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 72 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 200
P + +++R+ M Y+ IHC ++ K EG AF++
Sbjct: 17 PIEVIKQRLQMYGSP------YRGVIHCATSVFKEEGIRAFYR 53
>SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29)
Length = 512
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 207 FSNVLRG----TGGAFVLVLMMR-SRRSCKSNVRIVTIISM*FRVAATPLRSCIIRHEND 371
F NVL G G + VL+ + R SR SN+ + ++ + F V A IIR N
Sbjct: 17 FINVLSGLVAVVGNSLVLITLYRTSRLHTMSNIFLASLAASDFVVGAVGNPLNIIREANA 76
Query: 372 FSNLFL 389
F+ ++L
Sbjct: 77 FAWIYL 82
>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
Length = 454
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 385 NKLLKSFSCLIIHDLRGVAATRNHIE 308
+KLLK+ CL +H + G +R+++E
Sbjct: 172 DKLLKNKQCLQLHSVNGACLSRSNLE 197
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 74 GIGDDTGDCGYGLS-DGPADYNG 9
G GD +G CGYG S G DY G
Sbjct: 179 GGGDYSGGCGYGSSYGGGGDYGG 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,828
Number of Sequences: 59808
Number of extensions: 291447
Number of successful extensions: 585
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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