Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30006
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   154   8e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   154   8e-40
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  154 bits (373), Expect = 8e-40
 Identities = 70/83 (84%), Positives = 77/83 (92%)
 Frame = +3

Query: 6   TPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGT 185
           TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG 
Sbjct: 210 TPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269

Query: 186 SAFFKGAFSNVLRGTGGAFVLVL 254
           +AFFKGAFSN+LRGTGGA VLVL
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVL 292



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 27  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 200
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 201 GAFSNVLR 224
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.049
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 69  YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 203
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  154 bits (373), Expect = 8e-40
 Identities = 70/83 (84%), Positives = 77/83 (92%)
 Frame = +3

Query: 6   TPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGT 185
           TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG 
Sbjct: 210 TPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269

Query: 186 SAFFKGAFSNVLRGTGGAFVLVL 254
           +AFFKGAFSN+LRGTGGA VLVL
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVL 292



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 27  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 200
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 201 GAFSNVLR 224
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.049
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 69  YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 203
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  DTVRRRMMMQSGRAKSDILYKNTI 149
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 435
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 321


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 435
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 374


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 338 GSGCDTESHRNYGNNSYVRF 279
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,200
Number of Sequences: 438
Number of extensions: 2629
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)