Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30005
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 92 5e-20
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 89 3e-19
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 32 0.053
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 29 0.50
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 1.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 4.6
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 6.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 6.1
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 6.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.1
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 91.9 bits (218), Expect = 5e-20
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = +1
Query: 76 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Score = 74.5 bits (175), Expect = 8e-15
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +3
Query: 252 PNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 432 SQE 440
SQE
Sbjct: 125 SQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 89.4 bits (212), Expect = 3e-19
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = +1
Query: 76 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Score = 74.9 bits (176), Expect = 6e-15
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +3
Query: 252 PNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 432 SQE 440
SQE
Sbjct: 125 SQE 127
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 31.9 bits (69), Expect = 0.053
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 HRVVHCR--VSKRNIQDGYKTCLQADNRQKEDEEIYQASIG 119
HRV++ R +SKR+I G + Q D ++E EIYQ S+G
Sbjct: 57 HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 28.7 bits (61), Expect = 0.50
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 443 ILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 321
+L ++ R+ HSD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 150 TPIPLKFV--IAIRLMPDKSLRP 88
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +1
Query: 67 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRH 246
R T VK+R K I+ S+ + KP G R R+ K Y +P G + +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595
Query: 247 MLPMDSVRS 273
LP D V++
Sbjct: 596 DLPSDHVKA 604
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 119 IAMTNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQWIP 265
IA+ N + E+ GG + + +PT+ PV C+ W P
Sbjct: 172 IAVYNSSPVTEITEIKQVTFTGGEDIKS--DFFKVIPTKHPVTCADWRP 218
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 36 NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 100 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 216 WLRFQQEDPSYAPNGFRKVLVHNVKELE 299
WLRF E P F+ +VH + E E
Sbjct: 1239 WLRFVDESPQTLFQTFQNPVVHYLDEAE 1266
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 36 NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 467 LIIQLYLFILLGAEASGRI 411
LIIQL+ F L+G E G++
Sbjct: 921 LIIQLFTFYLIGFEEEGKM 939
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +3
Query: 327 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 413
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,529
Number of Sequences: 5004
Number of extensions: 34897
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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