Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30005
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 101 3e-22
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 100 5e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 100 5e-22
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 97 7e-21
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 27 8.1
03_05_0796 + 27787401-27788831 27 8.1
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 27 8.1
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 8.1
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 101 bits (242), Expect = 3e-22
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 34 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 213
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 214 IGYGSNKKTRHMLP 255
IGYGS+KKTRH LP
Sbjct: 378 IGYGSDKKTRHYLP 391
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMXNR 320
Y PN F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 100 bits (240), Expect = 5e-22
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 97.1 bits (231), Expect = 7e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 100 bits (240), Expect = 5e-22
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 70.9 bits (166), Expect = 5e-13
Identities = 29/38 (76%), Positives = 35/38 (92%)
Frame = +1
Query: 142 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLP 136
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 138
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 97.1 bits (231), Expect = 7e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
Score = 81.8 bits (193), Expect = 3e-16
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVT 410
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 332 RDRSWCLFEEAEADRGKSPAAQHQSDECGRSPP 430
+ R++ LF+E D KSP AQ S SPP
Sbjct: 472 KKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPP 504
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 359 EAEADRGKSPAAQHQSDECGR 421
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 282 CELGPYGIHWEHMTGLLVGTVT 217
C LG + HW+H T L+ +T
Sbjct: 79 CILGYFAFHWDHATALISQALT 100
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 454 YIYSFSWERRRAAAFVTLMLSCWALSTISFRFFEE 350
Y+++ ER A + +TLM++C++L + F +
Sbjct: 177 YLFNSQLERNIALSIITLMITCFSLVVVGGFLFHK 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,540
Number of Sequences: 37544
Number of extensions: 247161
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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