Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30005
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   151   3e-39
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  151 bits (367), Expect = 3e-39
 Identities = 67/70 (95%), Positives = 69/70 (98%)
 Frame = +1

Query: 46  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 226 SNKKTRHMLP 255
           SNKKTRHMLP
Sbjct: 61  SNKKTRHMLP 70



 Score =  114 bits (274), Expect = 5e-28
 Identities = 56/65 (86%), Positives = 59/65 (90%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
           P GFRKVLVHNVKELE+LMM NR +CAEIAHG SSKKRK IVERAQQLSIRVT A+ARLR
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLR 129

Query: 432 SQENE 446
           SQENE
Sbjct: 130 SQENE 134


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 467 LIIQLYLFILLGAEASGRI 411
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 467 LIIQLYLFILLGAEASGRI 411
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 467 LIIQLYLFILLGAEASGRI 411
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,080
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)