Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30005
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   103   9e-23
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)            99   8e-22
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)            99   8e-22
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    28   3.9  
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain...    27   5.1  
At4g30910.1 68417.m04389 cytosol aminopeptidase family protein c...    27   6.8  
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    27   9.0  

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  103 bits (246), Expect = 9e-23
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  AR
Sbjct: 67  YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126

Query: 426 LRSQENE 446
           LRSQE+E
Sbjct: 127 LRSQEDE 133



 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/70 (61%), Positives = 56/70 (80%)
 Frame = +1

Query: 46  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 226 SNKKTRHMLP 255
           S+KKTRH LP
Sbjct: 60  SDKKTRHYLP 69


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =   99 bits (238), Expect = 8e-22
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 426 LRSQENE 446
           LRSQE+E
Sbjct: 127 LRSQEDE 133



 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/70 (61%), Positives = 56/70 (80%)
 Frame = +1

Query: 46  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 226 SNKKTRHMLP 255
           S+KKTRH LP
Sbjct: 60  SDKKTRHYLP 69


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =   99 bits (238), Expect = 8e-22
 Identities = 45/67 (67%), Positives = 53/67 (79%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMXNRXYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 426 LRSQENE 446
           LRSQE+E
Sbjct: 127 LRSQEDE 133



 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/70 (61%), Positives = 56/70 (80%)
 Frame = +1

Query: 46  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 226 SNKKTRHMLP 255
           S+KKTRH LP
Sbjct: 60  SDKKTRHYLP 69


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 103 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG---YGSNKKTRHMLPM 258
           +R Q D Y K++R WR   G +   +R  +  YL+ +IG   Y S   T   LP+
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYLI-SIGSNDYSSIFLTNQSLPI 199


>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
           protein similar to PF02225: PA domain; similar to
           N-acetylated-alpha-linked acidic dipeptidase II
           (NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
           Glutamate carboxypeptidase II (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate
           carboxypeptidase)(Folylpoly-gamma-glutamate
           carboxypeptidase) (FGCP) (Folate hydrolase 1)
           (Prostate-specific membrane antigen homolog) (SP|O77564)
           {Sus scrofa}
          Length = 280

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 49  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 159
           A+ P     ++ + +K +++H + R DKL++   KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230


>At4g30910.1 68417.m04389 cytosol aminopeptidase family protein
           contains Pfam profiles: PF00883 cytosol aminopeptidase
           family catalytic domain, PF02789: cytosol aminopeptidase
           family N-terminal domain
          Length = 581

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 409 VTLMLSCWALSTISFRFFEETP*AISAQYXLFXII 305
           VTL+ SC + S   FR F  +P ++S+ +  F ++
Sbjct: 3   VTLVTSCASSSRFHFRSFSSSPSSLSSCFVRFQLL 37


>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  RNIQDGYKTCLQADNRQKEDE 95
           RN+  G KTCL   N  +E+E
Sbjct: 517 RNLLSGLKTCLDVSNYMRENE 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,283
Number of Sequences: 28952
Number of extensions: 189007
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)