Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30003
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.6  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   2.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.6  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   8.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.1  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.1  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 359  CSAGRVCEINEHGDAMCNCIKDC 427
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 312 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 491
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 492 AKY 500
           ++Y
Sbjct: 184 SQY 186


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 304 IRDLVEKVVNSGYFCLMYRFSSKLSDIPCSMCSASEMSPRP 182
           +R ++EK   +  FC++  + +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 576  ILDLNVVVLRTTALIRVVEA*ASWRYTSQSDCQVSLKF 463
            +L L +V+   T  I + E    W Y  +++  V LKF
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKNESGVLLKF 2376


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 497 VYRQDAYASTTLISAVVRN 553
           +Y+ D + S+T++ A +RN
Sbjct: 242 IYKNDTFVSSTMVRAAIRN 260


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 514  SILAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVFV 386
            SI+AVYF   +  F+ + A   +G C +   + A T  +   V
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSAPTERIRYIV 2819


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 439 CLVGTVLDAVTHGVSVFVDFADT-SC 365
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,293
Number of Sequences: 5004
Number of extensions: 50194
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)