Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30003
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0178 + 1514878-1515417 31 1.2
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.6
03_02_0520 + 9092020-9092079,9092253-9093047 29 4.8
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 6.4
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.4
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 28 8.4
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 28 8.4
06_01_0985 - 7646772-7647451,7647957-7648107 28 8.4
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.4
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 8.4
>01_01_0178 + 1514878-1515417
Length = 179
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 481 AIGLRSIPPGCLCLDNSDQCRGPQYHHVQIEYYGTAEKCL 600
A+ RS+PP C C D C G VQ+E +CL
Sbjct: 124 AVCTRSMPPTCSCQDKVKSCSGGCGKCVQVESQPPRFRCL 163
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 350 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 484
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 336 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 479
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 406 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 263
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 589 EKCLTALKARCLTSPVACGTGFLTSCATWL 678
+ C L C S CG F T CA +L
Sbjct: 319 DPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 412 LHQGLSLRDRLQTHGVHKLQRNLA---IGLRSIPPGCLCLDNSDQCRGPQYHHVQIE 573
L G R +L T H+L+ N + +G PG LCL S CRG H Q++
Sbjct: 625 LPAGCPCRGQLLTMD-HRLEENASGGEVGPLGCWPGGLCLSRSIGCRGAISHVDQVK 680
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 244 SSKLSDIPCSMCSASEMSPRPSCSDVG 164
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
VLD+ ++ +PA +L+RWT +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,140
Number of Sequences: 37544
Number of extensions: 401719
Number of successful extensions: 1155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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