Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01055
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   134   1e-32
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   132   4e-32
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    28   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   5.0  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  134 bits (324), Expect = 1e-32
 Identities = 58/85 (68%), Positives = 71/85 (83%)
 Frame = +2

Query: 254 KPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKL 433
           KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL
Sbjct: 251 KPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKL 310

Query: 434 ISWYDNEYGYSSRVIDLIKYIQSKD 508
           +SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 311 VSWYDNEWGYSHRVVDLVAYTASKD 335



 Score =  111 bits (266), Expect = 1e-25
 Identities = 57/82 (69%), Positives = 60/82 (73%)
 Frame = +3

Query: 6   FEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGK 185
           F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGK
Sbjct: 168 FGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGK 227

Query: 186 LTGMAFRVPVANVSVVDLTVRL 251
           LTGMAFRVP  +VSVVDLTV+L
Sbjct: 228 LTGMAFRVPTPDVSVVDLTVKL 249


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  132 bits (320), Expect = 4e-32
 Identities = 57/85 (67%), Positives = 71/85 (83%)
 Frame = +2

Query: 254 KPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKL 433
           KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL
Sbjct: 251 KPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKL 310

Query: 434 ISWYDNEYGYSSRVIDLIKYIQSKD 508
           +SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 311 VSWYDNEWGYSRRVVDLVAYTAAKD 335



 Score =  111 bits (266), Expect = 1e-25
 Identities = 57/82 (69%), Positives = 60/82 (73%)
 Frame = +3

Query: 6   FEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGK 185
           F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGK
Sbjct: 168 FGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGK 227

Query: 186 LTGMAFRVPVANVSVVDLTVRL 251
           LTGMAFRVP  +VSVVDLTV+L
Sbjct: 228 LTGMAFRVPTPDVSVVDLTVKL 249


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 413 NDNFVKLISWYDNEYGYSSRVIDLIKYIQSKDKLLIKCMNVRIFFNMY 556
           +DN   +I+W  N   ++ + I+ I    S    L++  ++ I +N+Y
Sbjct: 219 DDNDDGIITWIQNSSDFALKTINQIYLYFSYPSCLVRVYSIGIIYNIY 266


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -3

Query: 349 HNLIFSIPE---NALQRTFSCLLDLLLDGF 269
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 404 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 496
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,206
Number of Sequences: 5004
Number of extensions: 54367
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)