Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01053
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    29   0.57 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 486 EQQRNNDQYSCDFEEDLCGWIQDEFHDFD---WKRLNTKTPSSFTLTGPWFDHTYGSRGK 656
           E++   D+ + DFE+    +   E  D D   W++   K  +S    G   D +Y  R  
Sbjct: 395 EEEEEEDEEASDFEDSFADFSDGEADDLDESRWRKEAAKEHNSLLAVGYKNDRSYVVRNN 454

Query: 657 --GHFMYIESTG 686
             G F +++  G
Sbjct: 455 KIGVFKHVDEKG 466


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 91  VSLLFFYFCSKLFFYVI*SVHVI-SEFRL 8
           V LLFF F S+LFF+ I   H++ + FR+
Sbjct: 118 VFLLFFKFYSRLFFFRIIPSHILYNSFRI 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,338
Number of Sequences: 5004
Number of extensions: 67330
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)