Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01053
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    26   1.5  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.7  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   6.2  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 507 QYSCDFEEDLCGWIQDEFHDFDWKRLNTKTPSSFTLTG 620
           +Y    + +LC W    +  ++ K  +T TP S T  G
Sbjct: 454 RYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSITYKG 491


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 600 SSFTLTGPWFDHTYGSRGKGHFMYIESTGRFI 695
           +S +L G  F+   GSRG   F      GRF+
Sbjct: 549 ASLSLPGSPFNLRRGSRGSHQFTIRNGRGRFV 580


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 587 HENSELLYAYRTVV*SHVRLQRKGPFHVYREYW 685
           HE   LL A      SH R+   G F+ + E W
Sbjct: 162 HEFERLLGAIELEAASHSRVVVAGDFNAWHEEW 194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,354
Number of Sequences: 2352
Number of extensions: 16437
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)