Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01052
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    62   7e-11
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    33   0.046
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    29   1.00 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   9.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.3  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
 Frame = +2

Query: 26  VDTDAGD-TLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDN----KVHGEMSVEAL 190
           VDTD  D TL KK+RNAQLAQ+N+I VVG  E+++ +VNVR RD+         ++VE +
Sbjct: 627 VDTDKSDNTLPKKIRNAQLAQYNFIFVVGAEEESTNSVNVRNRDDPKKQSKGSTVAVEEV 686

Query: 191 IEHLNNLVREKKLSED 238
           ++ L  L   K L  D
Sbjct: 687 VKKLLKLKESKSLIND 702


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 26  VDTDA-GDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDN 157
           VD +A   ++ K++R ++L  +NY +V+GE E +   ++V +R N
Sbjct: 403 VDINAEAQSIGKRLRESRLLNYNYEIVIGEDEVDKEILSVSSRHN 447


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 86  FNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSELLK 253
           F  ++ VG R KN G +N+   D +   +  VEA I    +++    L  DS  LK
Sbjct: 755 FELLVEVGNRMKNGGKINMSLIDGEEPNKTVVEANINEYISMI-SANLMNDSLNLK 809


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 499 QCDARHALIHKHYTSATCECVERELHGRRSEGCKV 603
           Q  A    +H  Y S    C+E + HG  S+  K+
Sbjct: 21  QISASAGDLHPVYVSCVNRCIENKCHGNPSDTSKL 55


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 399  CLIIIA*VDKKCYAIVLPRQFPSATRFFFLNLAASS 292
            C + I  V  +C+  + PR FP+ T F +L+L + S
Sbjct: 1733 CFVDIYSVILECFLAIQPRSFPAFT-FAWLSLISHS 1767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,133
Number of Sequences: 5004
Number of extensions: 54279
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)