Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01052
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...    52   7e-07
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    36   0.048
07_03_1181 + 24606407-24606480,24607060-24608752                       29   3.2  
02_05_0013 + 24975298-24975352,24975533-24976494,24976621-249771...    29   5.5  

>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%)
 Frame = +2

Query: 47  TLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKK 226
           T+   VR AQLAQFNYILVVG +E  +G V+VR RD      +S++ +I      V   K
Sbjct: 582 TVLNNVREAQLAQFNYILVVGAQEAETGQVSVRVRDKAELATVSIDDIITRFKEEVAAYK 641


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 41  GDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVRE 220
           G+ L K +RNA+  +   + VVG +E  + T+ +R+R +   G M V+     +   +  
Sbjct: 644 GERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFFRRIQLAIAN 703

Query: 221 KKLS 232
           K  S
Sbjct: 704 KSSS 707


>07_03_1181 + 24606407-24606480,24607060-24608752
          Length = 588

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 125 SGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSELL 250
           SG VNV  RD+ + G+      IE+L   + E K + D+++L
Sbjct: 480 SGIVNVYKRDDFLGGKRKPLKTIENLTTEIGEMKFNHDAQVL 521


>02_05_0013 +
           24975298-24975352,24975533-24976494,24976621-24977136,
           24977250-24977442,24978108-24978439
          Length = 685

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 475 CRLFMMRMQCDARHALIHKHYTSATCECVERELHGR 582
           CR+ + ++     H   HKH+ S   E V+R++  R
Sbjct: 78  CRMKLPKLLFSVLHKTFHKHFQSQLIEFVKRQIKDR 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,432,318
Number of Sequences: 37544
Number of extensions: 344424
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)