Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01052
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 456 LMFNIAWSCFIIVLKLNYH 400
           +MF +A S  + VL LN+H
Sbjct: 332 IMFMVASSVVLTVLVLNFH 350


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 456 LMFNIAWSCFIIVLKLNYH 400
           +MF +A S  + VL LN+H
Sbjct: 332 IMFMVASSVVLTVLVLNFH 350


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 699 M*IDKLFLSSYCIASIAG 646
           M +D+LFL  + IASI G
Sbjct: 483 MVLDRLFLWIFTIASIVG 500


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 104 VGEREKNSGTVN 139
           VG++  NSGT+N
Sbjct: 45  VGKKNSNSGTIN 56


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 456 LMFNIAWSCFIIVLKLNYH 400
           +MF +A S    +L LNYH
Sbjct: 301 IMFMVASSVVSTILILNYH 319


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 629 ES*NSVTKKTLHPSLRLPCSSRSTHSHVA 543
           E  N + K  L+P+  L  S  S HSH++
Sbjct: 263 EDANLLLKARLNPNSSLQPSLASHHSHLS 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,828
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)