Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01050
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    30   0.27 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.63 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   1.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   1.9  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   1.9  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   4.5  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   5.9  

>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 169 KGGEELLKKRLEITDKMPKELCDLREH 249
           K G++L+K    ITD+ PK L +++EH
Sbjct: 120 KDGDKLVKNTDSITDETPKVLSEIKEH 146


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 7   YNLKENLQED-DLQYLQLFTEYGKLL--KNEDGSKA--FQMLMFLIRDWPYYYEHAFGAK 171
           ++L  N+ ED D   L     Y KLL  K   G+K   F+ + FL  +W +  EH +   
Sbjct: 530 WSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSGNKNLYFKEIDFLENEWAFLNEHIYWIN 589

Query: 172 GGE 180
           GG+
Sbjct: 590 GGD 592


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +2

Query: 473 YDCFQQ*FYDNSSSIFENTKRAALMAAIREA-----TSKYTKIMDAACNTDTPSMPGEGV 637
           +  FQQ    NS S+F+N    A    + E+       K   I + + NT +P  P    
Sbjct: 30  WPAFQQSHTFNSMSVFKNDNAIANQTTVNESDVKRNVEKINDIYECSNNTKSPCFPNSDS 89

Query: 638 RV 643
           R+
Sbjct: 90  RI 91


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 455  YIFPNLYDCFQQ*FYDNSSSIFENTKRAALMAAIREATSKYTKIMDAACNTDTP 616
            Y+ P L++C Q     N++    N+    L AAI + T K T  M  A NT  P
Sbjct: 879  YVAPLLFECMQFTSTTNANMFSNNSISVLLKAAILKPT-KLTHGMFDALNTMKP 931


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  LKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEELLKKRLEI 207
           + +E  +K    +  L++ W + Y H    K  +E +KK+ EI
Sbjct: 1   MHDESRTKQISSIKALLKKWEHEYVHTNNCKPSKEDVKKQPEI 43


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 252 SSCFDKVSCFLMPHPGFKVSNPSYNGNFSELSTEFRNAL--KELVP 383
           SS FD V   +  +P  + SNP        + T++RN L  +EL+P
Sbjct: 304 SSKFDIVEDDMDTNPSKRFSNPHTKHIMDLVRTQYRNVLRTRELIP 349


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 433 LTPFIFFIFKFSGANIDGTSSLRAFLNSVESSE 335
           +  F+F  F FSG   DG S    +    ++SE
Sbjct: 7   IASFLFLCFAFSGVKADGCSEENGYYYCNQASE 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,779
Number of Sequences: 5004
Number of extensions: 55549
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)