Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01050
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534     29   3.5  
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    29   4.6  
11_02_0149 - 8801675-8804332                                           28   6.1  
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   8.0  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    28   8.0  
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    28   8.0  

>06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534
          Length = 96

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 652 VMSNTNSFTWHTWRVGIARSI--HDLRVLTGSFPNSCHQCRPLGILED 515
           V+S  + F W+ W +GIARSI    L + T    N      P GI ED
Sbjct: 39  VLSKLSHFYWYLWFLGIARSICWPCLMLETHKDVNEGQDILPDGIDED 86


>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 229 ALLAFYL*FQVSFLIALHLLWHRKHVHNSKAN 134
           ALL + L F V + I L  L H K + N +AN
Sbjct: 714 ALLGYVLLFNVLYTICLTFLTHAKEIINDEAN 745


>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 40  LQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDW 138
           L+YL+L +EY K+      S+ +++++ +++DW
Sbjct: 112 LRYLKLGSEYDKISPPRCISRFYKLIVLVLKDW 144


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 204 NYR*NAKRAM*PPGTYSSCFDKVSCFLMPHPGFKVSNPSYNGNFSELSTEF 356
           NYR N      P      C ++V C    H G ++ +PS   NF     EF
Sbjct: 564 NYRLNHDGICCPVTISLPCSEQVRCLYCEHQGIRIVHPSVE-NFHGREVEF 613


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 279 FLMPHPGFKVSNPSYNGNFSELSTE---FRNALKE-LVPSIFAPENLNIKKINGV 431
           FL+P PG + +  S   N S    E    R  L E L+P++  P  L +  ++ +
Sbjct: 591 FLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHEMLIPAVLKPSGLKLDSLSNL 645


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 354 FRNALKELVPSIFAPENLNIKKINGV 431
           F+ +LK  + +++  E+LN+K+ING+
Sbjct: 66  FKVSLKLFLHALYGMESLNLKRINGI 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,094
Number of Sequences: 37544
Number of extensions: 326191
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)