Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01047
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 33 0.26
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 33 0.26
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 1.4
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 30 1.8
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 29 3.2
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 29 3.2
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 28 9.6
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 28 9.6
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 287 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 451
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 287 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 451
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 452 IANFSQTSPNVSELDFPLYQPLCEFFSHPRPSH 354
++ +SQTSPN S P Y P +S P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +1
Query: 448 AICCRRPKRREYPRTNRTNQQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIA 627
+I C R +P +++ K+F G ++KRI + + DI HLQ +
Sbjct: 270 SIMCSIVATRSWPELESFFEEWHSLKFF-DQMGGIFPVVKRILTHGA--VHDIRHLQTLL 326
Query: 628 GDITHNITKLLPY--IGHVPIAQVPNRNEPDTPGEINY 735
++T N+T Y G + + V + + + P +NY
Sbjct: 327 RNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNY 364
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -2
Query: 708 LVTIRNLSYWHMSNVWQ*FRNIMSNVA-SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 532
L+ I + S+ H+ V + + I+S + ++ +++ + S W N+ +I
Sbjct: 574 LLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWK----NSTQMIAIAID 629
Query: 531 EIFGHRILLIGSISPWIFSP 472
+ G+R+L +I W+FSP
Sbjct: 630 RMMGYRLLSNLAIVKWVFSP 649
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 9 INN*IYIVNLLQSRKEIV*NFIIM-KFCANLSFMFAEASSILERYALAKDAGFKAVESGF 185
IN +IV LQS V +++M +F + + FA+A++ + Y K AG + + F
Sbjct: 591 INQTSHIVQTLQSAGLPVYVYVLMNEFVSQPNDFFADATTQINTYVQKKGAGVDGIITDF 650
Query: 186 P 188
P
Sbjct: 651 P 651
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 449 LYAVDVLKGENIQGLIEPINSILCPN 526
+Y++D L G N G++ P LCPN
Sbjct: 299 MYSID-LSGNNFTGIVPPEIGTLCPN 323
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 161 SSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 66
+ +FS S++ G + KH+R ++ FH K+
Sbjct: 145 TKLFSDSLANHEGEKWVKHRRILNPAFHLEKL 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,162
Number of Sequences: 37544
Number of extensions: 396510
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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