Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01047
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 449 LYAVDVLKGENIQGLIEPINSILCPNIS*VIMEELW 556
           L  + +++G  + G +E +   + PN+S +   E+W
Sbjct: 245 LLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 280


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 449 LYAVDVLKGENIQGLIEPINSILCPNIS*VIMEELW 556
           L  + +++G  + G +E +   + PN+S +   E+W
Sbjct: 298 LLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 333


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 457 CRRPKRREYPRTNRTNQQYSMPKYFLSD 540
           C R + REY +  R +Q +++ +  L +
Sbjct: 253 CSRDRSREYKKDRRYDQLHNVEEKHLRE 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,407
Number of Sequences: 438
Number of extensions: 4929
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)