Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01042
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    73   4e-14
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    62   6e-11
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    56   4e-09
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    28   1.3  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    27   2.9  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    26   5.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.7  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    26   6.7  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +1

Query: 253 HQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGP--LRVRNKKFERRKYNWAL 426
           H FFW+F +   + +N PV++WL GGPG +SL GLF E GP  + +   K E   ++W  
Sbjct: 600 HLFFWFFESR-NDPENDPVVLWLNGGPGCSSLTGLFMELGPSSINIETLKPEYNPHSWNS 658

Query: 427 SHHIIYIDNPVGTGFS 474
           +  +I++D P+ TGFS
Sbjct: 659 NASVIFLDQPINTGFS 674



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
 Frame = +3

Query: 519 GEQLYSTLIQFFQLFPELQTNKFFVTGESYGGKYVPALAYTIHKKNPTAQI--------- 671
           G+ +Y+ L  FF  FP+     F + GESY G Y+P  A  I + N  A           
Sbjct: 687 GKDVYAFLNLFFAKFPQYAHLDFHIAGESYAGHYIPQFAKEIMEHNQGANFFVASGYEME 746

Query: 672 --KINMKGIAIGNGLSDP-VHQLVYGK 743
              IN+K + IGNGL+DP V    YGK
Sbjct: 747 KQYINLKSVLIGNGLTDPLVQYYFYGK 773


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
 Frame = +1

Query: 259 FFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPLRV-RNKKFERRKYNWALSHH 435
           FFW F ++ P  ++  ++ WL GGPG +S  G   E GP R+  N  F+     W    +
Sbjct: 61  FFWMFESVKPEYEHRSIL-WLNGGPGCSSEDGSLMEVGPFRLDDNNTFQLNPGRWDELGN 119

Query: 436 IIYIDNPVGTGFSFTKDPKGYCVDGLKLANSYT 534
           ++++D P+GTG+S++   K +  +  K+AN ++
Sbjct: 120 LLFVDQPLGTGYSYSL-AKDFQSNNEKMANDFS 151



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +3

Query: 546 QFFQLFPELQTNKFFVTGESYGGKYVPALAYTIHKKNPTAQIKINMKGIAIGNGLSDPV- 722
           +F + FPE   +++F+ GES+ G+Y+P +A  + +KN      +N+ G+AIGNG  +P+ 
Sbjct: 156 KFLEEFPERANDEWFIAGESFAGQYIPHIAAKLKEKN-----LVNLGGLAIGNGWINPLS 210

Query: 723 HQLVYGKYLYQ 755
           H   Y  YL +
Sbjct: 211 HYETYLNYLVE 221


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +1

Query: 259 FFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPLRV--RNKKFERRKYNWALSH 432
           F+ Y PA+V +      IVWLQGGPG     G F+ENGP+ +   +        +W    
Sbjct: 88  FYTYAPAVVDSET---FIVWLQGGPGCAGTLGFFSENGPIEISQSSPSPSLNPESWTNFA 144

Query: 433 HIIYIDNPVGTGFS 474
           +++++D P GTG+S
Sbjct: 145 NMLWLDQPFGTGYS 158



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 513 QVGEQLYSTLIQFFQLFPELQTNKFFVTGESYGGKYVPALAYTIHKKNPTAQIKINMKGI 692
           +      + L  F+Q FP L   K ++ GESYG  +    A  +  +     + IN  G+
Sbjct: 170 EASSDFVNALKSFYQKFPHLMKKKLYLVGESYGSIWSANFAEALLSE---PSLNINFMGV 226

Query: 693 AIGNGLS 713
            I +GL+
Sbjct: 227 GIVSGLT 233


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 422 AQLYFRLSNFLLRTLKGPFSVKSP-YRDVAPGPPWSQTITGAFLLFGT-IAGKY 267
           + LYF    F+    KGPF   SP   D+   P WS+   G   ++   +  KY
Sbjct: 252 SNLYFSAIKFINVMKKGPFYEHSPILYDITAVPIWSKVNQGLIKMYDVEVLSKY 305


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 266 QKNWWSRKSYLP*SSLHN 213
           +K+WWSRK Y P  S  N
Sbjct: 23  RKHWWSRKGYHPTGSSKN 40


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 746 IFTIHELMYRVTQTISYCNTLHINFNLC 663
           IFTI ++ + + Q ISY       FNLC
Sbjct: 292 IFTIPQIRFSIYQEISYRENQVGGFNLC 319


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 274 PAMVPNSKNAPVIVWLQGGPGATSLYG 354
           PA +   K+  +I+WL   PG  + +G
Sbjct: 917 PAQITGCKDNKLIIWLSTAPGLDAQWG 943


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 651 SCELCRPELVHTFLHMILQSQK 586
           S E+C PE   +FL + LQ++K
Sbjct: 168 SAEMCEPETRLSFLQLALQAEK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,080
Number of Sequences: 5004
Number of extensions: 70095
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)