Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01041
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     28   3.2  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    27   4.3  
11_01_0119 - 931934-932359,933409-933564                               27   5.6  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   5.6  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    26   9.9  

>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 HNAKYDSKLFRKRVENLHYVL 174
           HNAK+ ++++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 HPPLASPFRAFWPMIRLTPPLPLNH 259
           HP + +  R+FWP   LT  L L H
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAH 344


>11_01_0119 - 931934-932359,933409-933564
          Length = 193

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 221 PMIRLTPPLPLNHSRWNRIHFRQSPYEERTRKQ 319
           P++ LTP +   H +WN     +    +RTR Q
Sbjct: 45  PLLALTPQIISMHDQWNCYRASEEGQGKRTRSQ 77


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 79  GTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 237
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNH 294


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 62  AVTYSSVPISIDLWS-TITTLSTTPSYSAKGLRTFI 166
           + T S+ P     WS ++TT+ +TP+Y  K    F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,797
Number of Sequences: 37544
Number of extensions: 196616
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)