Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01041
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   1.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.3  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 386 CLLNIY*LLKQYLNVDVDIVIKLV 315
           CLL  + L+    NVD DI++ L+
Sbjct: 76  CLLEAFSLVDDEANVDEDIMLGLL 99


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 386 CLLNIY*LLKQYLNVDVDIVIKLV 315
           CLL  + L+    NVD DI++ L+
Sbjct: 76  CLLEAFSLVDDEANVDEDIMLGLL 99


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 QVPSTIGKSIQGILAYDKTHTTASAKSLKVESDSLSSISV 297
           QVP T   ++        T+++A   S  +ES S+ S S+
Sbjct: 529 QVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSI 568


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  YISPRRCGDRRMRSP 71
           YI+   CGD R+ SP
Sbjct: 366 YINTAPCGDARIFSP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,051
Number of Sequences: 438
Number of extensions: 2074
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)