Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01039
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7N7Z9 Cluster: Putative uncharacterized protein; n=4; ...    35   1.8  
UniRef50_A0RRE8 Cluster: Peptide ABC transporter, permease prote...    33   5.6  
UniRef50_A0CZD1 Cluster: Chromosome undetermined scaffold_32, wh...    33   5.6  
UniRef50_A3Y1H7 Cluster: Exonuclease SbcC; n=3; Vibrionales|Rep:...    33   9.9  

>UniRef50_A7N7Z9 Cluster: Putative uncharacterized protein; n=4;
           Vibrio harveyi ATCC BAA-1116|Rep: Putative
           uncharacterized protein - Vibrio harveyi ATCC BAA-1116
          Length = 443

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +2

Query: 203 IHWQC-HSTSHVSIPIRSS-EGETYLRLEEENLDMILDLPDLSHFDKTDPT 349
           I+WQ  H++SH   PI+S+ + E   +L++E  D+I+++    H  K DP+
Sbjct: 220 INWQRQHNSSHWMTPIKSNIQYEVIKKLDKEGRDLIVEMDVSQHARKQDPS 270


>UniRef50_A0RRE8 Cluster: Peptide ABC transporter, permease protein;
           n=1; Campylobacter fetus subsp. fetus 82-40|Rep: Peptide
           ABC transporter, permease protein - Campylobacter fetus
           subsp. fetus (strain 82-40)
          Length = 316

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 154 GSLQCSVPFSICCILNGISSIIEYSLYWLFILIATNSLCSRPDIWMQV 11
           G++   + F +  IL G+S+I + SL+   ++I T S  S P  W+ +
Sbjct: 105 GTISFFLSFVLAVILGGLSAIFQGSLFDKIVMIITLSFFSVPSFWLSL 152


>UniRef50_A0CZD1 Cluster: Chromosome undetermined scaffold_32, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_32,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 417

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 602 KLKHCITFSFLITLLPQIHIILRSN 676
           KL++C +F ++ TL+PQ+H+ +R N
Sbjct: 77  KLQYCCSFQYIYTLIPQLHLGIRLN 101


>UniRef50_A3Y1H7 Cluster: Exonuclease SbcC; n=3; Vibrionales|Rep:
           Exonuclease SbcC - Vibrio sp. MED222
          Length = 1238

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +2

Query: 194 ITKIHWQCHSTSHVSIPIRSSEGETYLRLEEENLDMILDLPDLSHFDKTDPTQARLSEWS 373
           +  ++ Q HSTS     I  ++ + +  L+E  +   ++ P+L H D  D   A+    S
Sbjct: 760 LADLNKQNHSTSEQVAQIALAKEQQWNALKESIVQTAIEAPELEHID--DWFTAKSQASS 817

Query: 374 AWAYRVVQHADIAK 415
            W     Q ADI K
Sbjct: 818 TWQQTKQQQADIEK 831


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,081,400
Number of Sequences: 1657284
Number of extensions: 12523038
Number of successful extensions: 28192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28185
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)