Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01039
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.53 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   3.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   8.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.7  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 435 DTTARPYWSIPTKEIPASLSRRRILNIQFSFSENTVL*TKLYASE 569
           D +  P+W+I  K+  + + +    NIQ   S NT   T L A+E
Sbjct: 623 DLSGDPFWAIQPKQSSSQVPKENHHNIQSKLSINTEAATDLKANE 667


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 136 VPFSICCILNGISSIIEYSLYWLFI 62
           VPF + C    +   IEY+LY LFI
Sbjct: 276 VPFVVSCFTYFLGDGIEYALYSLFI 300


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 278 LEEENLDMILDLPDLSHFDKTDPTQARLSEWSAWAYRVVQHADIAKM 418
           LE  NL  + D  D++HF+  +    R    ++W  R +  A   +M
Sbjct: 46  LELPNLSALNDHLDVTHFNDNEKIHKRQDSINSWLTRTLNGASALQM 92


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 281 EEENLDMILDLPDLSHFDKTDPTQARLSEWSAWAYRVVQHADIAKMS 421
           E EN D  L+    S  D +D    R S + +WA + +  AD+ + S
Sbjct: 290 EFENEDFDLET---SEDDSSDDATERASRFKSWANKQILGADVGEKS 333


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 550 LSFTHQNTNTMKEKKKR*IKALYYIQFLNHSLASNTH 660
           L  T Q  N + +K+K   K +  I+ L  +LAS+TH
Sbjct: 133 LKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTH 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,184
Number of Sequences: 5004
Number of extensions: 56194
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)