Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01039
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506...    30   1.7  
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    29   3.9  
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    29   3.9  
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    29   5.2  

>09_06_0043 +
           20448793-20449823,20449915-20450030,20450491-20450661,
           20450761-20450807,20451090-20451182,20451571-20451709,
           20452028-20452130,20452749-20452866
          Length = 605

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +2

Query: 182 P*RAITKIHWQCHSTSHVSIPIRSSEGETYLRLEEENLDMILDLPDLSHFDKTDPTQA-- 355
           P ++  +  W+      V   +RS + +  LRL++EN   ILD+  ++ F +  P  A  
Sbjct: 435 PAKSPAEEEWKIKRQVLVEKRVRSVDVKEALRLQKENNFAILDVRPVADFKEAHPPGAVN 494

Query: 356 -----RLSEWSAW 379
                 + EW+AW
Sbjct: 495 VQIYRLIKEWTAW 507


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +3

Query: 3   DTGTCIQISGLEQSELVAISMNSQYKEYSIMLEMPFKIQQILNG-TEHCNEPDRAFQNIG 179
           D  TC+Q + ++    ++ S++S+ + +S+          + +  T  C  PD     +G
Sbjct: 574 DYVTCVQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQAAIVG 633

Query: 180 LHKGPLRRFTGNATAQVTYPYRLD-QVKAKRT*DLKK 287
            HKG   RF   A  ++    ++D  +  KR    KK
Sbjct: 634 SHKGSC-RFYKTADCKLNQEAQIDMNISKKRKSHAKK 669


>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 145 QCSVPFSICCILNGISSIIEYSLYWLFI 62
           +C V F  C +++G+ S + Y   W+FI
Sbjct: 803 KCHVLFMACILVHGLISTLGYQTVWVFI 830


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 148 LQCSVPFSICCILNGISSIIEYSLYWLFILIATNSLCSRPDIWMQV 11
           L C VPF +  +L+ +SS  ++  Y   ++I  + +C  P +   V
Sbjct: 405 LTCMVPFIVAFLLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMV 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,253
Number of Sequences: 37544
Number of extensions: 326338
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)